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  • Remarkably High Repeat Content in the Genomes of Sparrows . . .
    After completion of the nuclear genomes, we searched for matches of the resulting mitochondrial assembly sequence in their nuclear genome assembly using BLAST+ (Camacho et al 2009), filtering out contigs and scaffolds from the nuclear genome with a sequence identity >99% and a size smaller than the mitochondrial assembly sequence
  • Genomic prediction with whole-genome sequence data in . . .
    Background Early simulations indicated that whole-genome sequence data (WGS) could improve the accuracy of genomic predictions within and across breeds However, empirical results have been ambiguous so far Large datasets that capture most of the genomic diversity in a population must be assembled so that allele substitution effects are estimated with high accuracy The objectives of this
  • The Cenozoic Era - University of California Museum of . . .
    The Cenozoic (65 5 million years ago to present) is divided into three periods: the Paleogene (65 5 to 23 03 million years ago), Neogene (23 03 to 2 6 million years ago) and the Quaternary (2 6 million years ago to present) Paleogene and Neogene are relatively new terms that now replace the deprecated term, Tertiary
  • DNA language model GROVER learns sequence context in the . . .
    The first draft of the human genome has been available for more than 20 years 1, and genomes of multiple species have become available since We know the letters, but we still understand little
  • North African fox genomes show signatures of repeated . . .
    Fig 1: Species relationships and geographic distribution of North African foxes Fig 2: Genetic structure, diversity and joint evolutionary history of North African red fox and Rueppell’s fox
  • Small, but surprisingly repetitive genomes: transposon . . .
    Background The causes and consequences of genome size variation across Eukaryotes, which spans five orders of magnitude, have been hotly debated since before the advent of genome sequencing Previous studies have mostly examined variation among larger taxonomic units (e g , orders, or genera), while comparisons among closely related species are rare Rotifers of the Brachionus plicatilis
  • Big Data: Astronomical or Genomical? | PLOS Biology
    We anticipate this sequencing will encompass genome sequences for most of the approximately 1 2 million described species of plants and animals With these genomes, plus those of thousands of individuals of “high value” species for energy, environmental, and agricultural reasons, we estimate that there will be at least 2 5 million plant





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